PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G214700.8
Common NameB456_002G214700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 218aa    MW: 24876.2 Da    PI: 5.4098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G214700.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.6e-061034123
                        EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                        + Cp  dCgk++ + + Lk+Hi +H
  Gorai.002G214700.8 10 HICPypDCGKRYAHEYKLKNHIASH 34
                        679999*****************96 PP

2zf-C2H214.88.1e-057398123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                        y Cp   C k + + + Lk H+r+ H
  Gorai.002G214700.8 73 YACPyeGCEKAYIHEYKLKLHLRReH 98
                        89**********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-9136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-6136No hitNo description
PROSITE profilePS501579.4941039IPR007087Zinc finger, C2H2
SMARTSM003550.00281034IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801235IPR007087Zinc finger, C2H2
SuperFamilySSF576674.96E-66896No hitNo description
Gene3DG3DSA:3.30.160.601.8E-96896IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.97273103IPR007087Zinc finger, C2H2
SMARTSM003550.00897398IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807598IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKTHSQENYH ICPYPDCGKR YAHEYKLKNH IASHHEKNTT PEVAKYAPPL EKIVKTPKPT  60
GGAYGSASSD RPYACPYEGC EKAYIHEYKL KLHLRREHPG HMSDENAENA TANVDNEMDE  120
ASDQDAYAGK RVNGKSQKQQ SRAKPNLKMP PAKVARQKGS SPSPATLPIP KKQWPIKEQV  180
FEEEDSEETE EDRDNVDDGW RYRENNEDDD EETEYED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467798.11e-159PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_012467799.11e-159PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_012467801.11e-159PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_012467802.11e-159PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L38e-75Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLA0A0D2RAB01e-162A0A0D2RAB0_G
STRINGPOPTR_0004s23050.11e-102(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.23e-74C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]